Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 98% [==================================================] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/final_image/MYH10_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 158.38 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 158.38 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 158.38 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 172.02 MB
Based on canonical annotations, the following gene is in your area of interest: MYH10(-)
write fasta - Elapsed time since the previous call: 1.18 seconds
write fasta - Current memory usage: 172.02 MB
Length of region: 86 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.19 seconds
write dat - Current memory usage: 175.17 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/fasta/MYH10.fasta" "/disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/ct/MYH10.ct" --SHAPE "MYH10.dat"

fold - Elapsed time since the previous call: 0.09 seconds
fold - Current memory usage: 175.17 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/ct/MYH10.ct" "/disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/fold_FE/MYH10.txt" -sh "MYH10.dat"

efn2 - Elapsed time since the previous call: 0.50 seconds
efn2 - Current memory usage: 175.17 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/ct/MYH10.ct" 1 "/disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/fold_dbn/MYH10_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 175.17 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'ACUUGGCCAAAAUCAGGAAUAAGCAAGAAGUGAUGAUCUCAGAUUUAGAAGAACGCUUAAAGAAGGAAGAAAAGACUCGUCAGGAA', '-structureDBN', '.(((((......))))).............((((((((((...(((((........)))))....)).))......))))))....', '-o', '/disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/final_image/MYH10_fold_1.svg', '-title', 'MYH10, -9.0 ± 1.1\n kcal/mol, AUC: 0.616', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '3,4,5,6,13,16,17,20,23,27,30,31,32,34,35,37,39,42,44,45,46,48,51,55,57,58,62,65,66,69,74,77,79,80,83,84', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,67,7,71,10,47,81,52,26,59,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '2,70,8,9,12,76,14,15,78,18,82,85,36,38,41,49,50,53,56,60', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '64,68,72,73,11,75,19,21,22,86,24,25,28,29,33,40,43,54,61']
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Text: '1', X: 5.5, Y: 195.4748705256036, Width: 9.0, Height: 8
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Text: '20', X: 103.5, Y: 195.4748705256036, Width: 18.0, Height: 8
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Text: '30', X: 278.5, Y: 195.47487052560362, Width: 18.0, Height: 8
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Text: 'MYH10, -9.0 ± 1.1
 kcal/mol, AUC: 0.616', X: 137.5, Y: 225.0295354483443, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 2.809305612031096, 416.5, 225.0295354483443)
Updated viewBox: -0.25 -2.190694387968904 421.75 232.2202298363132
Updated SVG: /disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/final_image/MYH10_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/e84f1e4f-e161-4694-883e-9353a2938e66/final_image/MYH10_fold_final_1.svg
