Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
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 95% [================================================  ] -                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/final_image/MAVS_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.54 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.54 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.54 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 170.01 MB
Based on canonical annotations, the following gene is in your area of interest: MAVS(+)
write fasta - Elapsed time since the previous call: 0.28 seconds
write fasta - Current memory usage: 170.01 MB
Length of region: 89 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.18 seconds
write dat - Current memory usage: 173.24 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/fasta/MAVS.fasta" "/disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/ct/MAVS.ct" --SHAPE "MAVS.dat"

fold - Elapsed time since the previous call: 0.10 seconds
fold - Current memory usage: 173.24 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/ct/MAVS.ct" "/disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/fold_FE/MAVS.txt" -sh "MAVS.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 173.24 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/ct/MAVS.ct" 1 "/disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/fold_dbn/MAVS_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.03 seconds
ct2dot - Current memory usage: 173.24 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAACCUGGGUGAGAGAGCGAGACCCUGUCUCAAGAAAAAGAAAAAUGCAGAGAAACAGGAGUCUUGGCUACUCCUUUAGAGGCAGACUC', '-structureDBN', '...(((....(((((((((((((((((((((..................))))..)))).)))))).)).))).))...))).......', '-o', '/disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/final_image/MAVS_fold_1.svg', '-title', 'MAVS, -29.3 ± 0.9\n kcal/mol, AUC: 0.571', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '6,7,8,9,10,11,13,15,17,19,21,26,27,28,30,34,40,46,47,50,52,58,59,61,62,64,65,66,67,69,72,75,76,77,79,81,82,85,88', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,2,3,4,5,71,73,74,14,80,83,20,84,23,29,31,35,41,42,57,60,63', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '70,16,18,22,24,89,25,33,36,37,38,39,43,44,45,48,55', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '32,68,12,78,49,51,53,54,86,56,87']
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Text: 'C', X: 408.2653172638985, Y: 191.89650766636868, Width: 10.5, Height: 8
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Text: 'C', X: 415.3089534092386, Y: 207.91640747417205, Width: 10.5, Height: 8
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Text: 'U', X: 407.462158381734, Y: 223.55858787833336, Width: 10.5, Height: 8
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Text: '40', X: 12.853635288867792, Y: 203.90427703799702, Width: 18.0, Height: 8
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Text: '50', X: 81.7253281902667, Y: 70.53148246969658, Width: 18.0, Height: 8
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Text: 'MAVS, -29.3 ± 0.9
 kcal/mol, AUC: 0.571', X: 195.2664860267854, Y: 375.2176839898515, Width: 142.5, Height: 23
Calculated bounding box: (4.75, 0.0, 532.0329720535708, 375.2176839898515)
Updated viewBox: -0.25 -5.0 537.2829720535708 385.2176839898515
Updated SVG: /disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/final_image/MAVS_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/f7302b97-824e-47de-8d43-4a1dad6f292e/final_image/MAVS_fold_final_1.svg
