Initializing nucleic acids...done.
Applying constraints...done.
Folding single strand...
  0% [=                                                 ] /                     
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 35% [==================                                ] \                     
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 89% [=============================================     ] |                     
 95% [================================================  ] /                     done.
Writing output ct file...done.
Single strand folding complete.
Initializing nucleic acids...done.
Applying SHAPE constraints...done.
Calculating free energies...done.
efn2 complete.
Converting CT file...CT file conversion complete.
/disk1/www/rails/humanrnamap/cli/./main.py:567: DeprecationWarning: Call to deprecated function (or staticmethod) VARNA. (Class has been renamed 'Structure')
  v = VARNA(structure=fold_dbn, sequence=seq)
Output file: /disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/final_image/MAVS_fold_1.svg

first - Elapsed time since the previous call: 0.00 seconds
first - Current memory usage: 156.54 MB
setup complete - Elapsed time since the previous call: 0.00 seconds
setup complete - Current memory usage: 156.54 MB
config complete - Elapsed time since the previous call: 0.00 seconds
config complete - Current memory usage: 156.54 MB
read annotations - Elapsed time since the previous call: 0.09 seconds
read annotations - Current memory usage: 170.04 MB
Based on canonical annotations, the following gene is in your area of interest: MAVS(+)
write fasta - Elapsed time since the previous call: 0.28 seconds
write fasta - Current memory usage: 170.04 MB
Length of region: 84 nt.
100.0% of the region's A/C bases included in the filtered DMS dataset. Ideally, this number should be as high as possible for an experimenally-accurate prediction, and over 70% is recommended.
write dat - Elapsed time since the previous call: 0.16 seconds
write dat - Current memory usage: 173.34 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/Fold "/disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/fasta/MAVS.fasta" "/disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/ct/MAVS.ct" --SHAPE "MAVS.dat"

fold - Elapsed time since the previous call: 0.09 seconds
fold - Current memory usage: 173.34 MB
Running command: /disk1/www/rails/humanrnamap/cli/bin/efn2 "/disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/ct/MAVS.ct" "/disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/fold_FE/MAVS.txt" -sh "MAVS.dat"

efn2 - Elapsed time since the previous call: 0.41 seconds
efn2 - Current memory usage: 173.34 MB
This region has 1 predicted structures. 5 is the maximum structures visible on the web server. For up to 20 predictions per region, download and run the code locally.
Running command: /disk1/www/rails/humanrnamap/cli/bin/ct2dot "/disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/ct/MAVS.ct" 1 "/disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/fold_dbn/MAVS_temp1.dbn"

ct2dot - Elapsed time since the previous call: 0.01 seconds
ct2dot - Current memory usage: 173.34 MB
['java', '-cp', '/disk1/www/rails/humanrnamap/cli/bin/VARNAv3-93.jar', 'fr.orsay.lri.varna.applications.VARNAcmd', '-sequenceDBN', 'CAAGGCAGAAGGACUGCUUGAGGCCAGGAGUUCAAAACCAGUGUAGGUAACAGCUAGACCCUAUCUCUACAAAAAAUUUAAAAA', '-structureDBN', '...(((((.....))))).((((..(((((((....(((......)))...))))....))).)))).................', '-o', '/disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/final_image/MAVS_fold_1.svg', '-title', 'MAVS, -17.6 ± 1.5\n kcal/mol, AUC: 0.662', '-titleSize', '12', '-basesStyle1', 'fill=#ffffff', '-applyBasesStyle1on', '4,5,8,11,12,15,16,18,19,20,22,23,27,28,30,31,32,41,42,43,44,46,47,48,53,55,57,62,64,66,68,77,78,79', '-basesStyle2', 'fill=#00ffff', '-applyBasesStyle2on', '1,2,67,6,7,74,76,14,17,82,84,24,25,26,29,36,39,59', '-basesStyle3', 'fill=#ffff00', '-applyBasesStyle3on', '65,3,69,70,71,73,13,80,81,21,34,35,37,38,40,50,51,54,58,60,61', '-basesStyle4', 'fill=#ff0000', '-applyBasesStyle4on', '33,72,9,10,75,45,49,83,52,56,63']
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Text: 'MAVS, -17.6 ± 1.5
 kcal/mol, AUC: 0.662', X: 163.75, Y: 387.89918041841975, Width: 142.5, Height: 23
Calculated bounding box: (2.8149735988718945, 5.0, 469.0, 387.89918041841975)
Updated viewBox: -2.1850264011281055 0.0 476.1850264011281 392.89918041841975
Updated SVG: /disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/final_image/MAVS_fold_final_1.svg
Combined SVG saved as /disk1/www/rails/humanrnamap/public/result/f8655d78-5148-41cf-b79f-ae0514b2dd3d/final_image/MAVS_fold_final_1.svg
